{ rPackages, fetchFromGitHub, jasp-src, jasp-version, }: with rPackages; let jaspColumnEncoder-src = fetchFromGitHub { owner = "jasp-stats"; repo = "jaspColumnEncoder"; rev = "c54987bb25de8963866ae69ad3a6ae5a9a9f1240"; hash = "sha256-aWfRG7DXO1MYFvmMLkX/xtHvGeIhFRcRDrVBrhkvYuI="; }; jaspGraphs = buildRPackage { name = "jaspGraphs-${jasp-version}"; version = jasp-version; src = jasp-src; sourceRoot = "${jasp-src.name}/Engine/jaspGraphs"; propagatedBuildInputs = [ ggplot2 gridExtra gtable lifecycle jsonlite R6 RColorBrewer rlang scales viridisLite ]; }; jaspBase = buildRPackage { name = "jaspBase-${jasp-version}"; version = jasp-version; src = jasp-src; sourceRoot = "${jasp-src.name}/Engine/jaspBase"; env.INCLUDE_DIR = "../inst/include/jaspColumnEncoder"; # necessary for R 4.4.0 hardeningDisable = [ "format" ]; postPatch = '' mkdir -p inst/include cp -r --no-preserve=all ${jaspColumnEncoder-src} inst/include/jaspColumnEncoder ''; propagatedBuildInputs = [ cli codetools ggplot2 gridExtra gridGraphics jaspGraphs jsonlite lifecycle modules officer pkgbuild plyr qgraph ragg R6 Rcpp renv remotes rjson rvg svglite systemfonts withr ]; }; stanova = buildRPackage { name = "stanova"; src = fetchFromGitHub { owner = "bayesstuff"; repo = "stanova"; rev = "988ad8e07cda1674b881570a85502be7795fbd4e"; hash = "sha256-tAeHqTHao2KVRNFBDWmuF++H31aNN6O1ss1Io500QBY="; }; propagatedBuildInputs = [ emmeans lme4 coda rstan MASS ]; }; bstats = buildRPackage { name = "bstats"; src = fetchFromGitHub { owner = "AlexanderLyNL"; repo = "bstats"; rev = "42d34c18df08d233825bae34fdc0dfa0cd70ce8c"; hash = "sha256-N2KmbTPbyvzsZTWBRE2x7bteccnzokUWDOB4mOWUdJk="; }; propagatedBuildInputs = [ hypergeo purrr SuppDists ]; }; flexplot = buildRPackage { name = "flexplot"; src = fetchFromGitHub { owner = "dustinfife"; repo = "flexplot"; rev = "303a03968f677e71c99a5e22f6352c0811b7b2fb"; hash = "sha256-iT5CdtNk0Oi8gga76L6YtyWGACAwpN8A/yTBy7JJERc="; }; propagatedBuildInputs = [ cowplot MASS tibble withr dplyr magrittr forcats purrr plyr R6 ggplot2 patchwork ggsci lme4 party mgcv rlang ]; }; # conting has been removed from CRAN conting' = buildRPackage { name = "conting"; src = fetchFromGitHub { owner = "vandenman"; repo = "conting"; rev = "03a4eb9a687e015d602022a01d4e638324c110c8"; hash = "sha256-Sp09YZz1WGyefn31Zy1qGufoKjtuEEZHO+wJvoLArf0="; }; propagatedBuildInputs = [ mvtnorm gtools tseries coda ]; }; buildJaspModule = name: deps: buildRPackage { name = "${name}-${jasp-version}"; version = jasp-version; src = jasp-src; sourceRoot = "${jasp-src.name}/Modules/${name}"; propagatedBuildInputs = deps; }; in { engine = { inherit jaspBase jaspGraphs; }; modules = rec { jaspAcceptanceSampling = buildJaspModule "jaspAcceptanceSampling" [ abtest BayesFactor conting' ggplot2 jaspBase jaspGraphs plyr stringr vcd vcdExtra AcceptanceSampling ]; jaspAnova = buildJaspModule "jaspAnova" [ afex BayesFactor boot car colorspace emmeans effectsize ggplot2 jaspBase jaspDescriptives jaspGraphs jaspTTests KernSmooth matrixStats multcomp multcompView mvShapiroTest onewaytests plyr stringi stringr restriktor ]; jaspAudit = buildJaspModule "jaspAudit" [ bstats extraDistr ggplot2 ggrepel jaspBase jaspGraphs jfa ]; jaspBain = buildJaspModule "jaspBain" [ bain lavaan ggplot2 semPlot stringr jaspBase jaspGraphs jaspSem ]; jaspBsts = buildJaspModule "jaspBsts" [ Boom bsts ggplot2 jaspBase jaspGraphs matrixStats reshape2 ]; jaspCircular = buildJaspModule "jaspCircular" [ jaspBase jaspGraphs circular ggplot2 ]; jaspCochrane = buildJaspModule "jaspCochrane" [ jaspBase jaspGraphs jaspDescriptives jaspMetaAnalysis ]; jaspDescriptives = buildJaspModule "jaspDescriptives" [ ggplot2 ggrepel jaspBase jaspGraphs jaspTTests forecast flexplot ggrain ggpp ggtext dplyr ]; jaspDistributions = buildJaspModule "jaspDistributions" [ car fitdistrplus ggplot2 goftest gnorm jaspBase jaspGraphs MASS sgt sn ]; jaspEquivalenceTTests = buildJaspModule "jaspEquivalenceTTests" [ BayesFactor ggplot2 jaspBase jaspGraphs metaBMA TOSTER jaspTTests ]; jaspFactor = buildJaspModule "jaspFactor" [ ggplot2 jaspBase jaspGraphs jaspSem lavaan psych qgraph reshape2 semPlot GPArotation Rcsdp semTools ]; jaspFrequencies = buildJaspModule "jaspFrequencies" [ abtest BayesFactor bridgesampling conting' multibridge ggplot2 jaspBase jaspGraphs plyr stringr vcd vcdExtra ]; jaspJags = buildJaspModule "jaspJags" [ coda ggplot2 ggtext hexbin jaspBase jaspGraphs rjags runjags scales stringr ]; jaspLearnBayes = buildJaspModule "jaspLearnBayes" [ extraDistr ggplot2 HDInterval jaspBase jaspGraphs MASS MCMCpack MGLM scales ggalluvial ragg rjags runjags ggdist png posterior ]; jaspLearnStats = buildJaspModule "jaspLearnStats" [ extraDistr ggplot2 jaspBase jaspGraphs jaspDistributions jaspDescriptives jaspTTests ggforce tidyr igraph ]; jaspMachineLearning = buildJaspModule "jaspMachineLearning" [ kknn AUC cluster colorspace DALEX dbscan e1071 fpc gbm Gmedian ggparty ggdendro ggnetwork ggplot2 ggrepel ggridges glmnet jaspBase jaspGraphs MASS mvnormalTest neuralnet network partykit plyr randomForest rpart ROCR Rtsne signal ]; jaspMetaAnalysis = buildJaspModule "jaspMetaAnalysis" [ dplyr ggplot2 jaspBase jaspGraphs MASS metaBMA metafor psych purrr rstan stringr tibble tidyr weightr BayesTools RoBMA metamisc ggmcmc pema ]; jaspMixedModels = buildJaspModule "jaspMixedModels" [ afex emmeans ggplot2 ggpol jaspBase jaspGraphs lme4 loo mgcv rstan rstanarm stanova withr ]; jaspNetwork = buildJaspModule "jaspNetwork" [ bootnet BDgraph corpcor dplyr foreach ggplot2 gtools HDInterval huge IsingSampler jaspBase jaspGraphs mvtnorm qgraph reshape2 snow stringr ]; jaspPower = buildJaspModule "jaspPower" [ pwr jaspBase jaspGraphs ]; jaspPredictiveAnalytics = buildJaspModule "jaspPredictiveAnalytics" [ jaspBase jaspGraphs bsts bssm precrec reshape2 Boom lubridate prophet BART EBMAforecast imputeTS ]; jaspProcess = buildJaspModule "jaspProcess" [ blavaan dagitty ggplot2 ggraph jaspBase jaspGraphs jaspJags runjags ]; jaspProphet = buildJaspModule "jaspProphet" [ rstan ggplot2 jaspBase jaspGraphs prophet scales ]; jaspQualityControl = buildJaspModule "jaspQualityControl" [ car cowplot daewr desirability DoE_base EnvStats FAdist fitdistrplus FrF2 ggplot2 ggrepel goftest ggpp irr jaspBase jaspDescriptives jaspGraphs mle_tools psych qcc rsm Rspc tidyr tibble vipor weibullness ]; jaspRegression = buildJaspModule "jaspRegression" [ BAS boot bstats combinat emmeans ggplot2 ggrepel hmeasure jaspAnova jaspBase jaspDescriptives jaspGraphs jaspTTests lmtest logistf MASS matrixStats mdscore ppcor purrr Rcpp statmod VGAM ]; jaspReliability = buildJaspModule "jaspReliability" [ Bayesrel coda ggplot2 ggridges irr jaspBase jaspGraphs LaplacesDemon lme4 MASS psych ]; jaspRobustTTests = buildJaspModule "jaspRobustTTests" [ RoBTT ggplot2 jaspBase jaspGraphs ]; jaspSem = buildJaspModule "jaspSem" [ forcats ggplot2 jaspBase jaspGraphs lavaan cSEM reshape2 semPlot semTools stringr tibble tidyr ]; jaspSummaryStatistics = buildJaspModule "jaspSummaryStatistics" [ BayesFactor bstats jaspBase jaspFrequencies jaspGraphs jaspRegression jaspTTests jaspAnova jaspDescriptives SuppDists bayesplay ]; jaspSurvival = buildJaspModule "jaspSurvival" [ survival survminer jaspBase jaspGraphs ]; jaspTTests = buildJaspModule "jaspTTests" [ BayesFactor car ggplot2 jaspBase jaspGraphs logspline plotrix plyr ]; jaspTimeSeries = buildJaspModule "jaspTimeSeries" [ jaspBase jaspGraphs jaspDescriptives forecast ]; jaspVisualModeling = buildJaspModule "jaspVisualModeling" [ flexplot jaspBase jaspGraphs jaspDescriptives ]; }; }