Only replace actual java commands with the full path
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@ -13,10 +13,10 @@ stdenv.mkDerivation rec {
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cp -Rv * $out/share/
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sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
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sed -i 's#java#${jdk17}/bin/java#g' $out/share/igv.sh
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sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igv.sh
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sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
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sed -i 's#java#${jdk17}/bin/java#g' $out/share/igvtools
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sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igvtools
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ln -s $out/share/igv.sh $out/bin/igv
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ln -s $out/share/igvtools $out/bin/igvtools
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