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53fd522c0d
Follows suit with https://go-review.googlesource.com/#/c/20111. Generated by running $ grep -R 'Go Authors. All' * | cut -d":" -f1 | while read F;do perl -pi -e 's/Go Authors. All/Go Authors. All/g' $F;done The code in cmd/internal/unvendor wasn't changed. Fixes #15213 Change-Id: I4f235cee0a62ec435f9e8540a1ec08ae03b1a75f Reviewed-on: https://go-review.googlesource.com/21819 Reviewed-by: Ian Lance Taylor <iant@golang.org> Run-TryBot: Ian Lance Taylor <iant@golang.org> TryBot-Result: Gobot Gobot <gobot@golang.org>
86 lines
1.8 KiB
Go
86 lines
1.8 KiB
Go
// Copyright 2011 The Go Authors. All rights reserved.
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// Use of this source code is governed by a BSD-style
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// license that can be found in the LICENSE file.
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// This benchmark, taken from the shootout, tests array indexing
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// and array bounds elimination performance.
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package go1
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import (
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"bufio"
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"bytes"
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"io/ioutil"
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"testing"
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)
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var revCompTable = [256]uint8{
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'A': 'T', 'a': 'T',
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'C': 'G', 'c': 'G',
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'G': 'C', 'g': 'C',
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'T': 'A', 't': 'A',
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'U': 'A', 'u': 'A',
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'M': 'K', 'm': 'K',
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'R': 'Y', 'r': 'Y',
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'W': 'W', 'w': 'W',
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'S': 'S', 's': 'S',
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'Y': 'R', 'y': 'R',
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'K': 'M', 'k': 'M',
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'V': 'B', 'v': 'B',
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'H': 'D', 'h': 'D',
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'D': 'H', 'd': 'H',
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'B': 'V', 'b': 'V',
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'N': 'N', 'n': 'N',
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}
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func revcomp(data []byte) {
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in := bufio.NewReader(bytes.NewBuffer(data))
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out := ioutil.Discard
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buf := make([]byte, 1024*1024)
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line, err := in.ReadSlice('\n')
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for err == nil {
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out.Write(line)
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// Accumulate reversed complement in buf[w:]
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nchar := 0
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w := len(buf)
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for {
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line, err = in.ReadSlice('\n')
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if err != nil || line[0] == '>' {
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break
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}
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line = line[0 : len(line)-1]
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nchar += len(line)
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if len(line)+nchar/60+128 >= w {
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nbuf := make([]byte, len(buf)*5)
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copy(nbuf[len(nbuf)-len(buf):], buf)
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w += len(nbuf) - len(buf)
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buf = nbuf
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}
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// This loop is the bottleneck.
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for _, c := range line {
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w--
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buf[w] = revCompTable[c]
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}
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}
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// Copy down to beginning of buffer, inserting newlines.
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// The loop left room for the newlines and 128 bytes of padding.
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i := 0
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for j := w; j < len(buf); j += 60 {
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n := copy(buf[i:i+60], buf[j:])
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buf[i+n] = '\n'
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i += n + 1
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}
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out.Write(buf[0:i])
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}
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}
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func BenchmarkRevcomp(b *testing.B) {
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b.SetBytes(int64(len(fastabytes)))
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for i := 0; i < b.N; i++ {
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revcomp(fastabytes)
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}
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}
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