mirror of
https://github.com/golang/go
synced 2024-11-11 21:40:21 -07:00
run benchmarks in a relatively fast test mode, as part of run.bash/all.bash
R=rsc DELTA=293 (224 added, 0 deleted, 69 changed) OCL=32917 CL=32944
This commit is contained in:
Rob Pike
parent
812f06b3ca
commit
266a2c47e0
@ -53,6 +53,10 @@ time make test
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time ./run
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) || exit $?
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(xcd ../test/bench
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./timing.sh -test
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) || exit $?
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(xcd ../test
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./run
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) || exit $?
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@ -42,7 +42,7 @@ import (
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"os";
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)
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var n = flag.Int("n", 20, "depth")
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var n = flag.Int("n", 15, "depth")
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type Node struct {
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item int;
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@ -108,7 +108,7 @@ func main() {
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stretchDepth := maxDepth + 1;
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check := bottomUpTree(0, stretchDepth).itemCheck();
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fmt.Println("stretch tree of depth ", stretchDepth, "\t check:", check);
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fmt.Printf("stretch tree of depth %d\t check: %d\n", stretchDepth, check);
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longLivedTree := bottomUpTree(0, maxDepth);
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@ -124,7 +124,7 @@ func main() {
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check += t.itemCheck();
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t.free();
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}
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fmt.Println(iterations*2, "\t trees of depth ", depth, "\t check: ", check);
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fmt.Printf("%d\t trees of depth %d\t check: %d\n", iterations*2, depth, check);
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}
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fmt.Println("long lived tree of depth", maxDepth, "\t check:", longLivedTree.itemCheck());
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fmt.Printf("long lived tree of depth %d\t check: %d\n", maxDepth, longLivedTree.itemCheck());
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}
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8
test/bench/binary-tree-freelist.txt
Normal file
8
test/bench/binary-tree-freelist.txt
Normal file
@ -0,0 +1,8 @@
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stretch tree of depth 16 check: -1
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65536 trees of depth 4 check: -65536
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16384 trees of depth 6 check: -16384
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4096 trees of depth 8 check: -4096
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1024 trees of depth 10 check: -1024
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256 trees of depth 12 check: -256
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64 trees of depth 14 check: -64
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long lived tree of depth 15 check: -1
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@ -42,7 +42,7 @@ import (
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"os";
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)
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var n = flag.Int("n", 20, "depth")
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var n = flag.Int("n", 15, "depth")
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type Node struct {
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item int;
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@ -75,7 +75,7 @@ func main() {
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stretchDepth := maxDepth + 1;
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check := bottomUpTree(0, stretchDepth).itemCheck();
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fmt.Println("stretch tree of depth ", stretchDepth, "\t check:", check);
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fmt.Printf("stretch tree of depth %d\t check: %d\n", stretchDepth, check);
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longLivedTree := bottomUpTree(0, maxDepth);
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@ -87,7 +87,7 @@ func main() {
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check += bottomUpTree(i,depth).itemCheck();
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check += bottomUpTree(-i,depth).itemCheck();
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}
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fmt.Println(iterations*2, "\t trees of depth ", depth, "\t check: ", check);
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fmt.Printf("%d\t trees of depth %d\t check: %d\n", iterations*2, depth, check);
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}
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fmt.Println("long lived tree of depth", maxDepth, "\t check:", longLivedTree.itemCheck());
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fmt.Printf("long lived tree of depth %d\t check: %d\n", maxDepth, longLivedTree.itemCheck());
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}
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@ -169,7 +169,7 @@ func (c *Chameneos) Serve() {
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func play(ref *Referee, color []Color) {
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cham := make([]Chameneos, len(color));
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for i, c := range color {
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fmt.Printf("%s ", c);
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fmt.Printf(" %s", c);
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ref.Add(cham[i].Init(i, ref, c));
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}
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fmt.Printf("\n");
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@ -179,7 +179,7 @@ func play(ref *Referee, color []Color) {
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total += c.count;
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fmt.Printf("%d %s\n", c.count, say(c.same));
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}
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fmt.Printf("%s\n\n", say(total));
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fmt.Printf("%s\n", say(total));
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}
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var words = []string{"zero", "one", "two", "three", "four", "five", "six", "seven", "eight", "nine"}
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@ -198,5 +198,6 @@ func main() {
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printColorTable();
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fmt.Print("\n");
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play(NewReferee(), []Color{blue, red, yellow});
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fmt.Print("\n");
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play(NewReferee(), []Color{blue, red, yellow, red, yellow, blue, red, yellow, red, blue});
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}
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171
test/bench/fasta-1000.out
Normal file
171
test/bench/fasta-1000.out
Normal file
@ -0,0 +1,171 @@
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>ONE Homo sapiens alu
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GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA
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TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACT
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AAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAG
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GCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCG
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CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGT
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GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCA
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GGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
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TTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG
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AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA
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GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGT
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AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACC
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AGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTG
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GTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACC
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CGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAG
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AGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTT
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TGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA
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TGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCT
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GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGG
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TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGT
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CTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG
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CGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCG
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TCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTA
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CTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCG
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AGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCG
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GGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACC
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TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAA
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TACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGA
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GGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACT
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GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTC
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ACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGT
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TCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC
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CGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCG
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CTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTG
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GGCGACAGAGCGAGACTCCG
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>TWO IUB ambiguity codes
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cttBtatcatatgctaKggNcataaaSatgtaaaDcDRtBggDtctttataattcBgtcg
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tactDtDagcctatttSVHtHttKtgtHMaSattgWaHKHttttagacatWatgtRgaaa
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NtactMcSMtYtcMgRtacttctWBacgaaatatagScDtttgaagacacatagtVgYgt
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cattHWtMMWcStgttaggKtSgaYaaccWStcgBttgcgaMttBYatcWtgacaYcaga
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gtaBDtRacttttcWatMttDBcatWtatcttactaBgaYtcttgttttttttYaaScYa
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HgtgttNtSatcMtcVaaaStccRcctDaataataStcYtRDSaMtDttgttSagtRRca
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tttHatSttMtWgtcgtatSSagactYaaattcaMtWatttaSgYttaRgKaRtccactt
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tattRggaMcDaWaWagttttgacatgttctacaaaRaatataataaMttcgDacgaSSt
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acaStYRctVaNMtMgtaggcKatcttttattaaaaagVWaHKYagtttttatttaacct
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tacgtVtcVaattVMBcttaMtttaStgacttagattWWacVtgWYagWVRctDattBYt
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gtttaagaagattattgacVatMaacattVctgtBSgaVtgWWggaKHaatKWcBScSWa
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accRVacacaaactaccScattRatatKVtactatatttHttaagtttSKtRtacaaagt
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RDttcaaaaWgcacatWaDgtDKacgaacaattacaRNWaatHtttStgttattaaMtgt
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tgDcgtMgcatBtgcttcgcgaDWgagctgcgaggggVtaaScNatttacttaatgacag
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cccccacatYScaMgtaggtYaNgttctgaMaacNaMRaacaaacaKctacatagYWctg
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ttWaaataaaataRattagHacacaagcgKatacBttRttaagtatttccgatctHSaat
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actcNttMaagtattMtgRtgaMgcataatHcMtaBSaRattagttgatHtMttaaKagg
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YtaaBataSaVatactWtataVWgKgttaaaacagtgcgRatatacatVtHRtVYataSa
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KtWaStVcNKHKttactatccctcatgWHatWaRcttactaggatctataDtDHBttata
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aaaHgtacVtagaYttYaKcctattcttcttaataNDaaggaaaDYgcggctaaWSctBa
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aNtgctggMBaKctaMVKagBaactaWaDaMaccYVtNtaHtVWtKgRtcaaNtYaNacg
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gtttNattgVtttctgtBaWgtaattcaagtcaVWtactNggattctttaYtaaagccgc
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tcttagHVggaYtgtNcDaVagctctctKgacgtatagYcctRYHDtgBattDaaDgccK
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tcHaaStttMcctagtattgcRgWBaVatHaaaataYtgtttagMDMRtaataaggatMt
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ttctWgtNtgtgaaaaMaatatRtttMtDgHHtgtcattttcWattRSHcVagaagtacg
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ggtaKVattKYagactNaatgtttgKMMgYNtcccgSKttctaStatatNVataYHgtNa
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BKRgNacaactgatttcctttaNcgatttctctataScaHtataRagtcRVttacDSDtt
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aRtSatacHgtSKacYagttMHtWataggatgactNtatSaNctataVtttRNKtgRacc
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tttYtatgttactttttcctttaaacatacaHactMacacggtWataMtBVacRaSaatc
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cgtaBVttccagccBcttaRKtgtgcctttttRtgtcagcRttKtaaacKtaaatctcac
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aattgcaNtSBaaccgggttattaaBcKatDagttactcttcattVtttHaaggctKKga
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tacatcBggScagtVcacattttgaHaDSgHatRMaHWggtatatRgccDttcgtatcga
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aacaHtaagttaRatgaVacttagattVKtaaYttaaatcaNatccRttRRaMScNaaaD
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gttVHWgtcHaaHgacVaWtgttScactaagSgttatcttagggDtaccagWattWtRtg
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ttHWHacgattBtgVcaYatcggttgagKcWtKKcaVtgaYgWctgYggVctgtHgaNcV
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taBtWaaYatcDRaaRtSctgaHaYRttagatMatgcatttNattaDttaattgttctaa
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ccctcccctagaWBtttHtBccttagaVaatMcBHagaVcWcagBVttcBtaYMccagat
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gaaaaHctctaacgttagNWRtcggattNatcRaNHttcagtKttttgWatWttcSaNgg
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gaWtactKKMaacatKatacNattgctWtatctaVgagctatgtRaHtYcWcttagccaa
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tYttWttaWSSttaHcaaaaagVacVgtaVaRMgattaVcDactttcHHggHRtgNcctt
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tYatcatKgctcctctatVcaaaaKaaaagtatatctgMtWtaaaacaStttMtcgactt
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taSatcgDataaactaaacaagtaaVctaggaSccaatMVtaaSKNVattttgHccatca
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cBVctgcaVatVttRtactgtVcaattHgtaaattaaattttYtatattaaRSgYtgBag
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aHSBDgtagcacRHtYcBgtcacttacactaYcgctWtattgSHtSatcataaatataHt
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cgtYaaMNgBaatttaRgaMaatatttBtttaaaHHKaatctgatWatYaacttMctctt
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ttVctagctDaaagtaVaKaKRtaacBgtatccaaccactHHaagaagaaggaNaaatBW
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attccgStaMSaMatBttgcatgRSacgttVVtaaDMtcSgVatWcaSatcttttVatag
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ttactttacgatcaccNtaDVgSRcgVcgtgaacgaNtaNatatagtHtMgtHcMtagaa
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attBgtataRaaaacaYKgtRccYtatgaagtaataKgtaaMttgaaRVatgcagaKStc
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tHNaaatctBBtcttaYaBWHgtVtgacagcaRcataWctcaBcYacYgatDgtDHccta
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>THREE Homo sapiens frequency
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aacacttcaccaggtatcgtgaaggctcaagattacccagagaacctttgcaatataaga
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atatgtatgcagcattaccctaagtaattatattctttttctgactcaaagtgacaagcc
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ctagtgtatattaaatcggtatatttgggaaattcctcaaactatcctaatcaggtagcc
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atgaaagtgatcaaaaaagttcgtacttataccatacatgaattctggccaagtaaaaaa
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tagattgcgcaaaattcgtaccttaagtctctcgccaagatattaggatcctattactca
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tatcgtgtttttctttattgccgccatccccggagtatctcacccatccttctcttaaag
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gcctaatattacctatgcaaataaacatatattgttgaaaattgagaacctgatcgtgat
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tcttatgtgtaccatatgtatagtaatcacgcgactatatagtgctttagtatcgcccgt
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gggtgagtgaatattctgggctagcgtgagatagtttcttgtcctaatatttttcagatc
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gaatagcttctatttttgtgtttattgacatatgtcgaaactccttactcagtgaaagtc
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atgaccagatccacgaacaatcttcggaatcagtctcgttttacggcggaatcttgagtc
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taacttatatcccgtcgcttactttctaacaccccttatgtatttttaaaattacgttta
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ttcgaacgtacttggcggaagcgttattttttgaagtaagttacattgggcagactcttg
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acattttcgatacgactttctttcatccatcacaggactcgttcgtattgatatcagaag
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ctcgtgatgattagttgtcttctttaccaatactttgaggcctattctgcgaaatttttg
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ttgccctgcgaacttcacataccaaggaacacctcgcaacatgccttcatatccatcgtt
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cattgtaattcttacacaatgaatcctaagtaattacatccctgcgtaaaagatggtagg
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ggcactgaggatatattaccaagcatttagttatgagtaatcagcaatgtttcttgtatt
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aagttctctaaaatagttacatcgtaatgttatctcgggttccgcgaataaacgagatag
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attcattatatatggccctaagcaaaaacctcctcgtattctgttggtaattagaatcac
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acaatacgggttgagatattaattatttgtagtacgaagagatataaaaagatgaacaat
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tactcaagtcaagatgtatacgggatttataataaaaatcgggtagagatctgctttgca
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attcagacgtgccactaaatcgtaatatgtcgcgttacatcagaaagggtaactattatt
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aattaataaagggcttaatcactacatattagatcttatccgatagtcttatctattcgt
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tgtatttttaagcggttctaattcagtcattatatcagtgctccgagttctttattattg
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ttttaaggatgacaaaatgcctcttgttataacgctgggagaagcagactaagagtcgga
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gcagttggtagaatgaggctgcaaaagacggtctcgacgaatggacagactttactaaac
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caatgaaagacagaagtagagcaaagtctgaagtggtatcagcttaattatgacaaccct
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taatacttccctttcgccgaatactggcgtggaaaggttttaaaagtcgaagtagttaga
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ggcatctctcgctcataaataggtagactactcgcaatccaatgtgactatgtaatactg
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ggaacatcagtccgcgatgcagcgtgtttatcaaccgtccccactcgcctggggagacat
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gagaccacccccgtggggattattagtccgcagtaatcgactcttgacaatccttttcga
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ttatgtcatagcaatttacgacagttcagcgaagtgactactcggcgaaatggtattact
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aaagcattcgaacccacatgaatgtgattcttggcaatttctaatccactaaagcttttc
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cgttgaatctggttgtagatatttatataagttcactaattaagatcacggtagtatatt
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gatagtgatgtctttgcaagaggttggccgaggaatttacggattctctattgatacaat
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ttgtctggcttataactcttaaggctgaaccaggcgtttttagacgacttgatcagctgt
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tagaatggtttggactccctctttcatgtcagtaacatttcagccgttattgttacgata
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tgcttgaacaatattgatctaccacacacccatagtatattttataggtcatgctgttac
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ctacgagcatggtattccacttcccattcaatgagtattcaacatcactagcctcagaga
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tgatgacccacctctaataacgtcacgttgcggccatgtgaaacctgaacttgagtagac
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gatatcaagcgctttaaattgcatataacatttgagggtaaagctaagcggatgctttat
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ataatcaatactcaataataagatttgattgcattttagagttatgacacgacatagttc
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actaacgagttactattcccagatctagactgaagtactgatcgagacgatccttacgtc
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gatgatcgttagttatcgacttaggtcgggtctctagcggtattggtacttaaccggaca
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ctatactaataacccatgatcaaagcataacagaatacagacgataatttcgccaacata
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tatgtacagaccccaagcatgagaagctcattgaaagctatcattgaagtcccgctcaca
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atgtgtcttttccagacggtttaactggttcccgggagtcctggagtttcgacttacata
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aatggaaacaatgtattttgctaatttatctatagcgtcatttggaccaatacagaatat
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tatgttgcctagtaatccactataacccgcaagtgctgatagaaaatttttagacgattt
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ataaatgccccaagtatccctcccgtgaatcctccgttatactaattagtattcgttcat
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acgtataccgcgcatatatgaacatttggcgataaggcgcgtgaattgttacgtgacaga
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gatagcagtttcttgtgatatggttaacagacgtacatgaagggaaactttatatctata
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gtgatgcttccgtagaaataccgccactggtctgccaatgatgaagtatgtagctttagg
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tttgtactatgaggctttcgtttgtttgcagagtataacagttgcgagtgaaaaaccgac
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gaatttatactaatacgctttcactattggctacaaaatagggaagagtttcaatcatga
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gagggagtatatggatgctttgtagctaaaggtagaacgtatgtatatgctgccgttcat
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tcttgaaagatacataagcgataagttacgacaattataagcaacatccctaccttcgta
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acgatttcactgttactgcgcttgaaatacactatggggctattggcggagagaagcaga
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tcgcgccgagcatatacgagacctataatgttgatgatagagaaggcgtctgaattgata
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catcgaagtacactttctttcgtagtatctctcgtcctctttctatctccggacacaaga
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attaagttatatatatagagtcttaccaatcatgttgaatcctgattctcagagttcttt
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ggcgggccttgtgatgactgagaaacaatgcaatattgctccaaatttcctaagcaaatt
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ctcggttatgttatgttatcagcaaagcgttacgttatgttatttaaatctggaatgacg
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gagcgaagttcttatgtcggtgtgggaataattcttttgaagacagcactccttaaataa
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tatcgctccgtgtttgtatttatcgaatgggtctgtaaccttgcacaagcaaatcggtgg
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tgtatatatcggataacaattaatacgatgttcatagtgacagtatactgatcgagtcct
|
||||
ctaaagtcaattacctcacttaacaatctcattgatgttgtgtcattcccggtatcgccc
|
||||
gtagtatgtgctctgattgaccgagtgtgaaccaaggaacatctactaatgcctttgtta
|
||||
ggtaagatctctctgaattccttcgtgccaacttaaaacattatcaaaatttcttctact
|
||||
tggattaactacttttacgagcatggcaaattcccctgtggaagacggttcattattatc
|
||||
ggaaaccttatagaaattgcgtgttgactgaaattagatttttattgtaagagttgcatc
|
||||
tttgcgattcctctggtctagcttccaatgaacagtcctcccttctattcgacatcgggt
|
||||
ccttcgtacatgtctttgcgatgtaataattaggttcggagtgtggccttaatgggtgca
|
||||
actaggaatacaacgcaaatttgctgacatgatagcaaatcggtatgccggcaccaaaac
|
||||
gtgctccttgcttagcttgtgaatgagactcagtagttaaataaatccatatctgcaatc
|
||||
gattccacaggtattgtccactatctttgaactactctaagagatacaagcttagctgag
|
||||
accgaggtgtatatgactacgctgatatctgtaaggtaccaatgcaggcaaagtatgcga
|
||||
gaagctaataccggctgtttccagctttataagattaaaatttggctgtcctggcggcct
|
||||
cagaattgttctatcgtaatcagttggttcattaattagctaagtacgaggtacaactta
|
||||
tctgtcccagaacagctccacaagtttttttacagccgaaacccctgtgtgaatcttaat
|
||||
atccaagcgcgttatctgattagagtttacaactcagtattttatcagtacgttttgttt
|
||||
ccaacattacccggtatgacaaaatgacgccacgtgtcgaataatggtctgaccaatgta
|
||||
ggaagtgaaaagataaatat
|
||||
@ -1,27 +1,27 @@
|
||||
A 30.284
|
||||
T 29.796
|
||||
C 20.312
|
||||
G 19.608
|
||||
T 31.520
|
||||
A 29.600
|
||||
C 19.480
|
||||
G 19.400
|
||||
|
||||
AA 9.212
|
||||
AT 8.950
|
||||
TT 8.948
|
||||
TA 8.936
|
||||
CA 6.166
|
||||
CT 6.100
|
||||
AC 6.086
|
||||
TC 6.042
|
||||
AG 6.036
|
||||
GA 5.968
|
||||
TG 5.868
|
||||
GT 5.798
|
||||
CC 4.140
|
||||
GC 4.044
|
||||
CG 3.906
|
||||
GG 3.798
|
||||
AT 9.922
|
||||
TT 9.602
|
||||
TA 9.402
|
||||
AA 8.402
|
||||
GA 6.321
|
||||
TC 6.301
|
||||
TG 6.201
|
||||
GT 6.041
|
||||
CT 5.961
|
||||
AG 5.841
|
||||
CA 5.461
|
||||
AC 5.441
|
||||
CC 4.041
|
||||
CG 4.021
|
||||
GC 3.701
|
||||
GG 3.341
|
||||
|
||||
562 GGT
|
||||
152 GGTA
|
||||
15 GGTATT
|
||||
0 GGTATTTTAATT
|
||||
0 GGTATTTTAATTTATAGT
|
||||
54 GGT
|
||||
24 GGTA
|
||||
4 GGTATT
|
||||
0 GGTATTTTAATT
|
||||
0 GGTATTTTAATTTATAGT
|
||||
|
||||
@ -1,2 +1,2 @@
|
||||
-0.169075164
|
||||
-0.169059907
|
||||
-0.169087605
|
||||
|
||||
@ -1,13 +1,13 @@
|
||||
agggtaaa|tttaccct 0
|
||||
[cgt]gggtaaa|tttaccc[acg] 3
|
||||
a[act]ggtaaa|tttacc[agt]t 9
|
||||
ag[act]gtaaa|tttac[agt]ct 8
|
||||
agg[act]taaa|ttta[agt]cct 10
|
||||
aggg[acg]aaa|ttt[cgt]ccct 3
|
||||
agggt[cgt]aa|tt[acg]accct 4
|
||||
agggta[cgt]a|t[acg]taccct 3
|
||||
agggtaa[cgt]|[acg]ttaccct 5
|
||||
agggtaaa|tttaccct 1
|
||||
[cgt]gggtaaa|tttaccc[acg] 0
|
||||
a[act]ggtaaa|tttacc[agt]t 0
|
||||
ag[act]gtaaa|tttac[agt]ct 0
|
||||
agg[act]taaa|ttta[agt]cct 1
|
||||
aggg[acg]aaa|ttt[cgt]ccct 0
|
||||
agggt[cgt]aa|tt[acg]accct 0
|
||||
agggta[cgt]a|t[acg]taccct 0
|
||||
agggtaa[cgt]|[acg]ttaccct 2
|
||||
|
||||
101745
|
||||
100000
|
||||
133640
|
||||
10245
|
||||
10000
|
||||
13348
|
||||
|
||||
@ -1 +1 @@
|
||||
292
|
||||
498
|
||||
|
||||
@ -6,6 +6,13 @@
|
||||
set -e
|
||||
. $GOROOT/src/Make.$GOARCH
|
||||
|
||||
mode=run
|
||||
case X"$1" in
|
||||
X-test)
|
||||
mode=test
|
||||
shift
|
||||
esac
|
||||
|
||||
gc() {
|
||||
$GC $1.go; $LD $1.$O
|
||||
}
|
||||
@ -14,7 +21,40 @@ gc_B() {
|
||||
$GC -B $1.go; $LD $1.$O
|
||||
}
|
||||
|
||||
runonly() {
|
||||
if [ $mode = run ]
|
||||
then
|
||||
"$@"
|
||||
fi
|
||||
}
|
||||
|
||||
|
||||
|
||||
run() {
|
||||
if [ $mode = test ]
|
||||
then
|
||||
if echo $1 | grep -q '^gc '
|
||||
then
|
||||
$1 # compile the program
|
||||
program=$(echo $1 | sed 's/gc //')
|
||||
shift
|
||||
echo $program
|
||||
$1 <fasta-1000.out > /tmp/$$
|
||||
case $program in
|
||||
chameneosredux)
|
||||
# exact numbers may vary but non-numbers should match
|
||||
grep -v '[0-9]' /tmp/$$ > /tmp/$$x
|
||||
grep -v '[0-9]' chameneosredux.txt > /tmp/$$y
|
||||
cmp /tmp/$$x /tmp/$$y
|
||||
rm -f /tmp/$$ /tmp/$$x /tmp/$$y
|
||||
;;
|
||||
*)
|
||||
cmp /tmp/$$ $program.txt
|
||||
rm -f /tmp/$$
|
||||
esac
|
||||
fi
|
||||
return
|
||||
fi
|
||||
echo -n ' '$1' '
|
||||
$1
|
||||
shift
|
||||
@ -22,7 +62,7 @@ run() {
|
||||
}
|
||||
|
||||
fasta() {
|
||||
echo 'fasta -n 25000000'
|
||||
runonly echo 'fasta -n 25000000'
|
||||
run 'gcc -O2 fasta.c' a.out 25000000
|
||||
#run 'gccgo -O2 fasta.go' a.out -n 25000000 #commented out until WriteString is in bufio
|
||||
run 'gc fasta' $O.out -n 25000000
|
||||
@ -30,9 +70,9 @@ fasta() {
|
||||
}
|
||||
|
||||
revcomp() {
|
||||
gcc -O2 fasta.c
|
||||
a.out 25000000 > x
|
||||
echo 'reverse-complement < output-of-fasta-25000000'
|
||||
runonly gcc -O2 fasta.c
|
||||
runonly a.out 25000000 > x
|
||||
runonly echo 'reverse-complement < output-of-fasta-25000000'
|
||||
run 'gcc -O2 reverse-complement.c' a.out < x
|
||||
run 'gccgo -O2 reverse-complement.go' a.out < x
|
||||
run 'gc reverse-complement' $O.out < x
|
||||
@ -41,7 +81,7 @@ revcomp() {
|
||||
}
|
||||
|
||||
nbody() {
|
||||
echo 'nbody -n 50000000'
|
||||
runonly echo 'nbody -n 50000000'
|
||||
run 'gcc -O2 nbody.c' a.out 50000000
|
||||
run 'gccgo -O2 nbody.go' a.out -n 50000000
|
||||
run 'gc nbody' $O.out -n 50000000
|
||||
@ -49,7 +89,7 @@ nbody() {
|
||||
}
|
||||
|
||||
binarytree() {
|
||||
echo 'binary-tree 15 # too slow to use 20'
|
||||
runonly echo 'binary-tree 15 # too slow to use 20'
|
||||
run 'gcc -O2 binary-tree.c -lm' a.out 15
|
||||
run 'gccgo -O2 binary-tree.go' a.out -n 15
|
||||
run 'gccgo -O2 binary-tree-freelist.go' $O.out -n 15
|
||||
@ -58,7 +98,7 @@ binarytree() {
|
||||
}
|
||||
|
||||
fannkuch() {
|
||||
echo 'fannkuch 12'
|
||||
runonly echo 'fannkuch 12'
|
||||
run 'gcc -O2 fannkuch.c' a.out 12
|
||||
run 'gccgo -O2 fannkuch.go' a.out -n 12
|
||||
run 'gc fannkuch' $O.out -n 12
|
||||
@ -66,9 +106,9 @@ fannkuch() {
|
||||
}
|
||||
|
||||
regexdna() {
|
||||
gcc -O2 fasta.c
|
||||
a.out 100000 > x
|
||||
echo 'regex-dna 100000'
|
||||
runonly gcc -O2 fasta.c
|
||||
runonly a.out 100000 > x
|
||||
runonly echo 'regex-dna 100000'
|
||||
run 'gcc -O2 regex-dna.c -lpcre' a.out <x
|
||||
# run 'gccgo -O2 regex-dna.go' a.out <x # pages badly; don't run
|
||||
run 'gc regex-dna' $O.out <x
|
||||
@ -77,7 +117,7 @@ regexdna() {
|
||||
}
|
||||
|
||||
spectralnorm() {
|
||||
echo 'spectral-norm 5500'
|
||||
runonly echo 'spectral-norm 5500'
|
||||
run 'gcc -O2 spectral-norm.c -lm' a.out 5500
|
||||
run 'gccgo -O2 spectral-norm.go' a.out -n 5500
|
||||
run 'gc spectral-norm' $O.out -n 5500
|
||||
@ -85,9 +125,9 @@ spectralnorm() {
|
||||
}
|
||||
|
||||
knucleotide() {
|
||||
gcc -O2 fasta.c
|
||||
a.out 1000000 > x # should be using 25000000
|
||||
echo 'k-nucleotide 1000000'
|
||||
runonly gcc -O2 fasta.c
|
||||
runonly a.out 1000000 > x # should be using 25000000
|
||||
runonly echo 'k-nucleotide 1000000'
|
||||
run 'gcc -O2 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include k-nucleotide.c -lglib-2.0' a.out <x
|
||||
run 'gccgo -O2 k-nucleotide.go' a.out <x # warning: pages badly!
|
||||
run 'gc k-nucleotide' $O.out <x
|
||||
@ -96,7 +136,7 @@ knucleotide() {
|
||||
}
|
||||
|
||||
mandelbrot() {
|
||||
echo 'mandelbrot 16000'
|
||||
runonly echo 'mandelbrot 16000'
|
||||
run 'gcc -O2 mandelbrot.c' a.out 16000
|
||||
run 'gccgo -O2 mandelbrot.go' a.out -n 16000
|
||||
run 'gc mandelbrot' $O.out -n 16000
|
||||
@ -104,7 +144,7 @@ mandelbrot() {
|
||||
}
|
||||
|
||||
meteor() {
|
||||
echo 'meteor 16000'
|
||||
runonly echo 'meteor 16000'
|
||||
run 'gcc -O2 meteor-contest.c' a.out
|
||||
run 'gccgo -O2 meteor-contest.go' a.out
|
||||
run 'gc meteor-contest' $O.out
|
||||
@ -112,7 +152,7 @@ meteor() {
|
||||
}
|
||||
|
||||
pidigits() {
|
||||
echo 'pidigits 10000'
|
||||
runonly echo 'pidigits 10000'
|
||||
run 'gcc -O2 pidigits.c -lgmp' a.out 10000
|
||||
# run 'gccgo -O2 pidigits.go' a.out -n 10000 # uncomment when gccgo library updated
|
||||
run 'gc pidigits' $O.out -n 10000
|
||||
@ -120,14 +160,14 @@ pidigits() {
|
||||
}
|
||||
|
||||
threadring() {
|
||||
echo 'threadring 50000000'
|
||||
runonly echo 'threadring 50000000'
|
||||
run 'gcc -O2 threadring.c -lpthread' a.out 50000000
|
||||
run 'gccgo -O2 threadring.go' a.out -n 50000000
|
||||
run 'gc threadring' $O.out -n 50000000
|
||||
}
|
||||
|
||||
chameneos() {
|
||||
echo 'chameneos 6000000'
|
||||
runonly echo 'chameneos 6000000'
|
||||
run 'gcc -O2 chameneosredux.c -lpthread' a.out 6000000
|
||||
# run 'gccgo -O2 chameneosredux.go' a.out -n 6000000 # doesn't support the non-forward-decl variant
|
||||
run 'gc chameneosredux' $O.out -n 6000000
|
||||
@ -144,5 +184,5 @@ esac
|
||||
for i in $run
|
||||
do
|
||||
$i
|
||||
echo
|
||||
runonly echo
|
||||
done
|
||||
|
||||
Loading…
Reference in New Issue
Block a user